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Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals

期刊: GENOME RESEARCH, 2021; 31 (7)

Protein-truncating variants (PTVs) have important impacts on phenotype diversity and disease. However, their population genetics characteristics in mo......

Alignment of single-cell RNA-seq samples without overcorrection using kernel density matching

期刊: GENOME RESEARCH, 2021; 31 (4)

Single-cell RNA sequencing (scRNA-seq) technology is poised to replace bulk cell RNA sequencing for many biological and medical applications as it all......

Tissue-specific reprogramming of host tRNA transcriptome by the microbiome

期刊: GENOME RESEARCH, 2021; 31 (6)

Transfer RNAs (tRNAs) are essential for translation, and tRNA expression and modifications are regulated by many factors. However, the interplay betwe......

Conserved noncoding sequences provide insights into regulatory sequence and loss of gene expression in maize

期刊: GENOME RESEARCH, 2021; 31 (7)

Thousands of species will be sequenced in the next few years; however, understanding how their genomes work, without an unlimited budget, requires bot......

Genomic analyses provide insights into peach local adaptation and responses to climate change

期刊: GENOME RESEARCH, 2021; 31 (4)

The environment has constantly shaped plant genomes, but the genetic bases underlying how plants adapt to environmental influences remain largely unkn......

Systematic evaluation of the effect of polyadenylation signal variants on the expression of disease-associated genes

期刊: GENOME RESEARCH, 2021; 31 (5)

Single nucleotide variants (SNVs) within polyadenylation signals (PASs), a specific six-nucleotide sequence required for mRNA maturation, can impair R......

Improved redox homeostasis owing to the up-regulation of one-carbon metabolism and related pathways is crucial for yeast heterosis at high temperature

期刊: GENOME RESEARCH, 2021; 31 (4)

Heterosis or hybrid vigor is a common phenomenon in plants and animals; however, the molecular mechanisms underlying heterosis remain elusive, despite......

A HIT-trapping strategy for rapid generation of reversible and conditional alleles using a universal donor

期刊: GENOME RESEARCH, 2021; 31 (5)

Targeted mutagenesis in model organisms is key for gene functional annotation and biomedical research. Despite technological advances in gene editing ......

Parental methylome reprogramming in human uniparental blastocysts reveals germline memory transition

期刊: GENOME RESEARCH, 2021; 31 (9)

Uniparental embryos derived from only the mother (gynogenetic [GG]) or the father (androgenetic [AG]) are unique models for studying genomic imprintin......

Ligand-induced native G-quadruplex stabilization impairs transcription initiation

期刊: GENOME RESEARCH, 2021; 31 (9)

G-quadruplexes (G4s) are noncanonical DNA secondary structures formed through the self-association of guanines, and G4s are distributed widely across ......

Allelic diversification after transposable element exaptation promoted gsdf as the master sex of sablefish

期刊: GENOME RESEARCH, 2021; 31 (8)

Concepts of evolutionary biology suggest that morphological change may occur by rare punctual but rather large changes, or by more steady and gradual ......

The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence

期刊: GENOME RESEARCH, 2021; 31 (7)

Heterochromatin remodeling is critical for various cell processes. In particular, the "loss of heterochromatin" phenotype in cellular senescence is as......

Genome-wide mapping reveals R-loops associated with centromeric repeats in maize

期刊: GENOME RESEARCH, 2021; 31 (8)

R-loops are stable chromatin structures comprising a DNA:RNA hybrid and a displaced single-stranded DNA. R-loops have been implicated in gene expressi......

MAnorm2 for quantitatively comparing groups of ChIP-seq samples

期刊: GENOME RESEARCH, 2021; 31 (1)

Eukaryotic gene transcription is regulated by a large cohort of chromatin-associated proteins, and inferring their differential binding sites between ......

Greater strength of selection and higher proportion of beneficial amino acid changing mutations in humans compared with mice and Drosophila melanogaster

期刊: GENOME RESEARCH, 2021; 31 (1)

Quantifying and comparing the amount of adaptive evolution among different species is key to understanding how evolution works. Previous studies have ......

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